|本期目录/Table of Contents|

[1]王琳,孙庆玲,刘辉,等.拟南芥缺失突变体at14a的比较转录组分析[J].江苏农业科学,2016,44(04):70-74.
 Wang Lin,et al.Comparative transcriptional analysis of mutant at14a of Arabidopsis thaliana[J].Jiangsu Agricultural Sciences,2016,44(04):70-74.
点击复制

拟南芥缺失突变体at14a的比较转录组分析(PDF)
分享到:

《江苏农业科学》[ISSN:1002-1302/CN:32-1214/S]

卷:
第44卷
期数:
2016年04期
页码:
70-74
栏目:
生物技术
出版日期:
2016-04-25

文章信息/Info

Title:
Comparative transcriptional analysis of mutant at14a of Arabidopsis thaliana
作者:
王琳 孙庆玲 刘辉 梁建生
扬州大学生物科学与技术学院,江苏扬州 225009
Author(s):
Wang Linet al
关键词:
AT14A拟南芥缺失突变体基因芯片转录组学
Keywords:
-
分类号:
S188;Q786
DOI:
-
文献标志码:
A
摘要:
以at14a相关基因型(野生、缺失)拟南芥植株为试验材料,利用转录组学和生物信息学等方法,分析野生型(col)、缺失突变体(at14a)拟南芥差异基因表达状况,初步探讨拟南芥AT14A的功能。结果表明:at14a在拟南芥植株根、茎、叶和花中均有表达,尤其在叶片中的表达量较高;相较于野生型,缺失突变体at14a中有194个差异基因,其中上调基因122个,下调基因72个;通过GO富集分析发现,2种基因型植株差异基因主要参与了应答胁迫过程,这表明at14a可能通过调控AT5G39610、AT1G53240、AT4G32770、AT1G02920、AT1G10760这些逆境胁迫相关基因的表达来参与应答胁迫。差异分子主要定位于细胞核,具有绑定的分子功能。通过pathway分析发现,2个基因型植株差异基因主要参与了核糖体代谢、碳水化合物代谢、光合等代谢途径。研究结果为深入研究at14a作用的分子机理奠定了基础。
Abstract:
-

参考文献/References:

[1]Hynes R O. Integrins:bidirectional,allosteric signaling machines[J]. Cell,2002,110(6):673-687.
[2]Qin J,Vinogradova O,Plow E F. Integrin bidirectional signaling:a molecular view[J]. PLoS Biology,2004,2(6):726-729.
[3]Wegener K L,Partridge A W,Han J,et al. Structural basis of integrin activation by talin[J]. Cell,2007,128(1):171-182.
[4]Kumar M N,Hsieh Y F,Verslues P E. At14a-Like1 participates in membrane-associated mechanisms promoting growth during drought in Arabidopsis thaliana[J]. Proceedings of the National Academy of Sciences of the United States of America,2015,112(33):10545-10550.
[5]Nick P. Microtubules,signalling and abiotic stress[J]. Plant Journal for Cell & Molecular Biology,2013,75(2):309-323.
[6]Schindler M,Meiners S,Cheresh D A. RGD-dependent linkage between plant cell wall and plasma membrane:consequences for growth[J]. Journal of Cell Biology,1989,108(5):1955-1965.
[7]Nagpal P,Quatrano R S. Isolation and characterization of a cDNA clone from Arabidopsis thaliana with partial sequence similarity to integrins[J]. Gene,1999,230(1):33-40.
[8]Lü B,Liang J S,Zhang J H,et al. AT14A mediates the cell wall-plasma membrane-cytoskeleton continuum in Arabidopsis thaliana cells[J]. Journal of Experimental Botany,2012,63(11):4061-4069.
[9]Velculescu V E,Zhang L,Zhou W,et al. Characterization of the yeast transcriptome[J]. Cell,1997,88(2):243-251.
[10]章琼,蒋高中,李冰. 水产动物对氨氮胁迫响应的转录组分析研究进展[J]. 江苏农业科学,2015,43(3):227-230.
[11]魏松红,刘志恒,纪明山,等. 基因芯片技术在植物病害中的应用[J]. 河南农业科学,2008(3):20-22.
[12]Knepper C,Savory E A,Day B. Arabidopsis NDR1 is an integrin-like protein with a role in fluid loss and plasma membrane-cell wall adhesion[J]. Plant Physiology,2011,156(1):286-300.
[13]He X J,Mu R L,Cao W H,et al. AtNAC2,a transcription factor downstream of ethylene and auxin signaling pathways,is involved in salt stress response and lateral root development[J]. The Plant Journal,2005,44(6):903-916.
[14]Havaux M,Eymery F,Porfirova S,et al. Vitamin E protects against photoinhibition and photooxidative stress in Arabidopsis thaliana[J].The Plant Cell,2005,17(12):3451-3469.
[15]Nakaminami K,Matsui A,Nakagami H A,et al. Analysis of differential expression patterns of mRNA and protein during cold-acclimation and de-acclimation in Arabidopsis[J]. Molecular & Cellular Proteomics,2014,13(12):3602-3611.
[16]Kouno T,Ezaki B. Multiple regulation of Arabidopsis AtGST11 gene expression by four transcription factors under abiotic stresses[J]. Physiologia Plantarum,2013,148(1):97-104.
[17]Yano R,Nakamura M,Yoneyama T,et al. Starch-related α-glucan/water dikinase is involved in the cold-induced development of freezing tolerance in Arabidopsis[J]. Plant Physiology,2005,138(2):837-846.

相似文献/References:

[1]王宏归,黄晨,姜雅,等.CONSTANS LIKE 7参与调控拟南芥的向地性以及侧根、子叶的发育[J].江苏农业科学,2015,43(12):48.
 Wang Honggui,et al.Study on CONSTANS LIKE 7 involved in regulating gravitropism and development of side root and cotyledon in Arabidopsis[J].Jiangsu Agricultural Sciences,2015,43(04):48.
[2]李雪,邵铁梅,安胜军.1种简单方便的拟南芥发芽诱导新技术[J].江苏农业科学,2015,43(12):51.
 LI Xue,et al.A simple and convenient technology for bud induction of Arabidopsis thaliana[J].Jiangsu Agricultural Sciences,2015,43(04):51.
[3]韩蕾,李俊林,苏彦华.拟南芥突变体kea的表型分析及对生长素的响应特征[J].江苏农业科学,2016,44(06):30.
 Han Lei,et al.Phenotypic analysis of arabidopsis mutant kea and its response to exogenous auxin[J].Jiangsu Agricultural Sciences,2016,44(04):30.
[4]奈婕菲,程玉祥.一个杨树GDSL基因组织表达的特性及其在拟南芥异源的表达[J].江苏农业科学,2014,42(03):16.
 Nai Jiefei,et al.Tissue expression of a poplar GDSL gene and its heterologous expression analysis in Arabidopsis thaliana[J].Jiangsu Agricultural Sciences,2014,42(04):16.
[5]郭瑾,薛永来,杜道林.植物激素调控拟南芥根系发育的研究进展[J].江苏农业科学,2014,42(05):7.
 Guo Jin,et al.Research progress of phytohormones regulating root system development of Arabidopsis thaliana[J].Jiangsu Agricultural Sciences,2014,42(04):7.
[6]刘广志,陈炳佑,侍福梅.MAP18参与了脱落酸调控的拟南芥气孔关闭及根生长[J].江苏农业科学,2015,43(11):55.
 Liu Guangzhi,et al.MAP18 involved in stomatal closure and root growth of Arabidopsis thaliana regulated by abscisic acid[J].Jiangsu Agricultural Sciences,2015,43(04):55.
[7]姜上川,梅超,王小芳,等.PPR蛋白APPR6参与ABA调控拟南芥种子萌发与幼苗生长[J].江苏农业科学,2016,44(04):53.
 Jiang Shangchuan,et al.PPR protein APPR6 involved in ABA regulation of seed germination and seedling growth in Arabidopsis[J].Jiangsu Agricultural Sciences,2016,44(04):53.
[8]李静婷,赵旭耀,刘超凡,等.热胁迫对转TasHSP16.9拟南芥幼苗生长生理特性的影响[J].江苏农业科学,2016,44(10):113.
 Li Jingting,et al.Effects of heat stress on growth and physiological indices of TasHSP16.9 transgenic Arabidopsis thaliana seedlings[J].Jiangsu Agricultural Sciences,2016,44(04):113.
[9]郝东利,杨顺瑛,黄亚楠,等.拟南芥铵转运蛋白AtAMT1.3的电生理功能[J].江苏农业科学,2017,45(08):36.
 Hao Dongli,et al.Electrophysiological study on Arabidopsis ammonium transporter AtAMT1.3[J].Jiangsu Agricultural Sciences,2017,45(04):36.
[10]郭丽红,徐娅,郤秋霞,等.拟南芥热激因子AtHsfA1a在低温胁迫下对细胞程序性死亡中Caspase-3活性的影响[J].江苏农业科学,2017,45(21):24.
 Guo Lihong,et al.Effects of heat shock factor AtHsfA1a on Caspase-3 enzyme activity during programmed cell death under low temperature stress in Arabidopsis thaliana[J].Jiangsu Agricultural Sciences,2017,45(04):24.

备注/Memo

备注/Memo:
收稿日期:2016-01-27
基金项目:国家自然科学基金(编号:31271622);扬州大学科技创新培育基金(编号:2015CXJ065)。
作者简介:王琳(1978一 ),女,江苏徐州人,博士研究生,讲师,主要从事植物生理和生化研究。E-mail:wanglin@yzu.edu.cn。
通信作者:梁建生,博士,教授,主要从事植物逆境生理与分子生物学研究。E-mail:jssliang@163.com。
更新日期/Last Update: 2016-04-25