|本期目录/Table of Contents|

[1]唐伟,朱治任,汪财生,等.基于COⅠ基因的DNA条形码在鳖科动物鉴定上的应用[J].江苏农业科学,2017,45(06):30-36.
 Tang Wei,et al.Application of DNA barcode based on COⅠ gene in identification of Trionychidae species[J].Jiangsu Agricultural Sciences,2017,45(06):30-36.
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基于COⅠ基因的DNA条形码
在鳖科动物鉴定上的应用
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《江苏农业科学》[ISSN:1002-1302/CN:32-1214/S]

卷:
第45卷
期数:
2017年06期
页码:
30-36
栏目:
生物技术
出版日期:
2017-04-20

文章信息/Info

Title:
Application of DNA barcode based on COⅠ gene in identification of Trionychidae species
作者:
唐伟1 朱治任1 汪财生1 张明兴2 钱国英1
1.浙江万里学院生物与环境学院,浙江宁波 315100; 2.余姚市明凤淡水养殖场,浙江宁波 315100
Author(s):
Tang Weiet al
关键词:
DNA条形码COⅠ基因中华鳖地理群体鳖科
Keywords:
-
分类号:
S932.5
DOI:
-
文献标志码:
A
摘要:
为探讨DNA条形码在中华鳖不同地理群体鉴定上的可行性,以中华鳖COⅠ基因全长序列为对象设计通用引物,对中华鳖6个地理群体及鳖科不同属间进行了遗传多样性分析。结果发现,不同地理群体中华鳖的遗传距离在0.020 3~0.041 7之间,群体内平均遗传距离在0.011 3~0.033 8之间,种间与种内的遗传距离没有形成有效的条形码间隙,在基于个体遗传距离的NJ树上,各群体间的个体并没有形成有效的分支。在对鳖科不同属进行分析时发现属间及属内遗传距离形成了明显的差异间隙,在NJ树上,不同鳖按照属的特性分别进行聚类,并具有较高的节点支持率,聚类分析可信度高。因此,COⅠ基因作为DNA条形码,能够有效地用于区分鳖科动物的不同属,但不适用于中华鳖地理群体的分离鉴定。
Abstract:
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参考文献/References:

[1]周婷. 中国龟鳖动物的分布[J]. 四川动物,2006,25(2):272-276.
[2]Lee J C I,Tsai L C,Liao S P,et al. Species identification using the cytochrome b gene of commercial turtle shells[J]. Forensic Science International:Genetics,2009,3(2):67-73.
[3]吴平,徐珞珊. 中药材龟甲的分子鉴定研究[J]. 药学学报,1998,33(4):304-309.
[4]Le M,Raxworthy C J,McCord W P,et al. A molecular phylogeny of tortoises (Testudines:Testudinidae) based on mitochondrial and nuclear genes[J]. Molecular Phylogenetics and Evolution,2006,40(2):517-531.
[5]辛翠娜,王莹,彭建军,等. DNA条形码在龟鳖类物种鉴定中的应用[J]. 林业实用技术,2010(4):12-14.
[6]杜鹤,崔丽娜,张辉,等. 鳖甲及其混伪品的DNA分子鉴定[J]. 世界科学技术-中医药现代化,2011,13(2):429-434.
[7]Ward R D,Zemlak T S,Innes B H,et al. DNA barcoding Australias fish species[J]. Philosophical Transactions of the Royal Society of London B:Biological Sciences,2005,360(1462):1847-1857.
[8]Hubert N,Hanner R,Holm E,et al. Identifying Canadian freshwater fishes through DNA barcodes[J]. PLoS One,2008,3(6):e2490.
[9]柳淑芳,陈亮亮,戴芳群,等. 基于线粒体COⅠ基因的DNA条形码在石首鱼科(Sciaenidae)鱼类系统分类中的应用[J]. 海洋与湖沼,2010,41(2):223-232.
[10]Kerr K C R,Stoeckle M Y,Dove C J,et al. Comprehensive DNA barcode coverage of North American birds[J]. Molecular Ecology Notes,2007,7(4):535-543.
[11]Hebert P D N,Stoeckle M Y,Zemlak T S,et al. Identification of birds through DNA barcodes[J]. PLoS Biol,2004,2(10):e312.
[12]Hajibabaei M,Janzen D H,Burns J M,et al. DNA barcodes distinguish species of tropical Lepidoptera[J]. Proceedings of the National Academy of Sciences of the United States of America,2006,103(4):968-971.
[13]Cywinska A,Hunter F F,Hebert P D N. Identifying Canadian mosquito species through DNA barcodes[J]. Medical and Veterinary Entomology,2006,20(4):413-424.
[14]Hebert P D N,Cywinska A,Ball S L. Biological identifications through DNA barcodes[J]. Proceedings of the Royal Society of London B:Biological Sciences,2003,270(1512):313-321.
[15]Hebert P D N,Ratnasingham S,de Waard J R. Barcoding animal life:cytochrome c oxidase subunit 1 divergences among closely related species[J]. Proceedings of the Royal Society of London B:Biological Sciences,2003,270(Suppl 1):S96-S99.
[16]Burland T G. DNASTARs Lasergene sequence analysis software[J]. Methods in Molecular Biology,2000,132:71-91.
[17]Thompson J D,Gibson T J,Plewniak F,et al. The CLUSTAL_X windows interface:flexible strategies for multiple sequence alignment aided by quality analysis tools[J]. Nucleic Acids Research,1997,25(24):4876-4882.
[18]Xia X,Xie Z. DAMBE:software package for data analysis in molecular biology and evolution[J]. Journal of Heredity,2001,92(4):371-373.
[19]Tamura K,Stecher G,Peterson D,et al. MEGA 6:molecular evolutionary genetics analysis version 6.0[J]. Molecular Biology and Evolution,2013,30(12):2725-2729.
[20]Meyer A. Evolution of mitochondrial DNA in fishes[J]. Biochemistry and Molecular Biology of Fishes,1993,2:1-38.
[21]Desalle R T,Freedman T,Prager E M,et al. Tempo and mode of sequence evolution in mitochondrial DNA of Hawaiian Drosophila[J]. Journal of Molecular Evolution,1987,26(1/2):157-164.
[22]Grant W,Bowen B W. Shallow population histories in deep evolutionary lineages of marine fishes:insights from sardines and anchovies and lessons for conservation[J]. Journal of Heredity,1998,89(5):415-426.
[23]杜启艳,常重杰. DNA条形码在鉴定物种中的应用[J]. 生物学教学,2010,35(12):60-61.
[24]Anderson E. Introgressive hybridization[M]. New York:John Wiley and Sons,1949.
[25]Simon P,Dupuis R,Costentin J. Thigmotaxis as an index of anxiety in mice. Influence of dopaminergic transmissions[J]. Behavioural Brain Research,1994,61(1):59-64.
[26]Vences M,Thomas M,Bonett R M,et al. Deciphering amphibian diversity through DNA barcoding:chances and challenges[J]. Philosophical Transactions of the Royal Society of London B:Biological Sciences,2005,360(1462):1859-1868.
[27]唐伟. 姚江水系中华鳖种质特征研究[D]. 上海:上海海洋大学,2015.

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备注/Memo

备注/Memo:
收稿日期:2016-01-29
基金项目:浙江省宁波市科技局农业重大项目(编号:2013C11011);浙江省宁波市科技创新团队项目(编号:2012B82016)。
作者简介:唐伟(1986—),男,广西桂林人,硕士,主要研究方向为中华鳖种质资源。E-mail:cltw2008@163.com。
通信作者:汪财生,高级实验师。主要研究方向为水产经济动物营养。E-mail:wangcaisheng@zwu.edu.cn。
更新日期/Last Update: 2017-03-20