|本期目录/Table of Contents|

[1]倪晓鹏,高志红.园艺作物基因组测序研究进展[J].江苏农业科学,2016,44(02):9-13.
　Ni Xiaopeng,et al.Research progress on genome sequencing of horticultural crops[J].Jiangsu Agricultural Sciences,2016,44(02):9-13.
点击复制

园艺作物基因组测序研究进展(PDF)
分享到：

《江苏农业科学》[ISSN:1002-1302/CN:32-1214/S]

卷:
第44卷
期数:
2016年02期
页码:
9-13
栏目:
专论
出版日期:
2016-02-25

文章信息/Info

Title:
Research progress on genome sequencing of horticultural crops
作者:
倪晓鹏;  高志红
南京农业大学园艺学院，江苏南京 210095
Author(s):
Ni Xiaopeng; et al
关键词:
园艺作物; 基因组测序; 基因组学
Keywords:
-
分类号:
Q78
DOI:
-
文献标志码:
A
摘要:
回顾了园艺作物全基因组测序的发展历程，介绍3代测序技术的特点和应用现状。总结了葡萄、番木瓜、草莓等果树，黄瓜、白菜、番茄等蔬菜以及莲、康乃馨等花卉在内的25种园艺作物基因组测序简况。重点介绍了全基因组测序在基因注释、比较基因组学研究、重测序、全基因组关联分析、转录组学、SNP芯片开发等方面的应用。最后讨论了全基因测序研究的难点和今后的研究方向。
Abstract:
-

参考文献/References:

［1］中华人民共和国农业部.中国农业统计资料：2013［M］. 北京：中华人民共和国农业部，2014.
［2］Collins F S，Morgan M，Patrinos A. The human genome project：lessons from large-scale biology［J］. Science，2003，300(5617)：286-290.
［3］Arabidopsis Genome Initiative. Analysis of the genome sequence of the flowering plant Arabidopsis thaliana［J］. Nature，2000，408(6814)：796-815.
［4］Schloss J A. How to get genomes at one ten-thousandth the cost［J］. Nature Biotechnology，2008，26(10)：1113-1115.
［5］Margulies M，Egholm M，Altman W E，et al. Genome sequencing in microfabricated high-density picolitre reactors［J］. Nature，2005，437(757)：376-380.
［6］Velasco R，Zharkikh A，Affourtit J，et al. The genome of the domesticated apple (Malus × domestica Borkh.)［J］. Nature Genetics，2010，42(10)：833-839.
［7］Argout X，Salse J，Aury J M，et al. The genome of Theobroma cacao［J］. Nature Genetics，2011，43(2)：101-108.
［8］Rodríguez-Moreno L，González V M，Benjak A，et al. Determination of the melon chloroplast and mitochondrial genome sequences reveals that the largest reported mitochondrial genome in plants contains a significant amount of DNA having a nuclear origin［J］. BMC Genomics，2011，12：424.
［9］Huang S，Li R，Zhang Z，et al. The genome of the cucumber，Cucumis sativus L.［J］. Nature Genetics，2009，41(12)：1275-1281.
［10］Shulaev V，Sargent D J，Crowhurst R N，et al. The genome of woodland strawberry (Fragaria vesca)［J］. Nature Genetics，2011，43(2)：109-116.
［11］Wang X，Wang H，Wang J，et al. The genome of the mesopolyploid crop species Brassica rapa［J］. Nature Genetics，2011，43(10)：1035-1039.
［12］Potato Genome Sequencing Consortium，Xu X，Pan S，et al. Genome sequence and analysis of the tuber crop potato［J］. Nature，2011，475(7355)：189-195.
［13］Dhont A，Denoeud F，Aury J M，et al. The banana (Musa acuminata) genome and the evolution of monocotyledonous plants［J］. Nature，2012，488(7410)：213-217.
［14］Xu Q，Chen L L，Ruan X，et al. The draft genome of sweet orange (Citrus sinensis)［J］. Nature Genetics，2013，45(1)：59-66.
［15］Guo S，Zhang J，Sun H，et al. The draft genome of watermelon (Citrullus lanatus) and resequencing of 20 diverse accessions［J］. Nature Genetics，2013，45(1)：51-58.
［16］Jaillon O，Aury J M，Noel B，et al. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla［J］. Nature，2007，449(7161)：463-467.
［17］Ming R，Hou S，Feng Y，et al. The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus)［J］. Nature，2008，452(7190)：991-996.
［18］Al-Dous E K，George B，Al-Mahmoud M E，et al. De novo genome sequencing and comparative genomics of date palm (Phoenix dactylifera)［J］. Nature Biotechnology，2011，29(6)：521-527.
［19］Sato S，Tabata S，Hirakawa H，et al. The tomato genome sequence provides insights into fleshy fruit evolution［J］. Nature，2012，485(740)：635-641.
［20］Wu J，Wang Z，Shi Z，et al. The genome of the pear (Pyrus bretschneideri Rehd.)［J］. Genome Research，2013，23(2)：396-408.
［21］Zhang Q，Chen W，Sun L，et al. The genome of Prunus mume［J］. Nature Communications，2012，3：1318.
［22］International Peach Genome Initiative，Verde I，Abbott A G，et al. The high-quality draft genome of peach (Prunus persica) identifies unique patterns of genetic diversity，domestication and genome evolution［J］. Nature Genetics，2013，45(5)：487-494.
［23］Ming R，Vanburen R，Liu Y，et al. Genome of the long-living sacred lotus (Nelumbo nucifera Gaertn.)［J］. Genome Biology，2013，14(5)：R41.
［24］Cheng S，van den Bergh E，Zeng P，et al. The tarenaya hassleriana genome provides insight into reproductive trait and genome evolution of crucifers［J］. The Plant Cell，2013，25(8)：2813-2830.
［25］Huang S，Ding J，Deng D，et al. Draft genome of the kiwifruit Actinidia chinensis［J］. Nature Communications，2013，4：2640.
［26］Yagi M，Kosugi S，Hirakawa H，et al. Sequence analysis of the genome of carnation (Dianthus caryophyllus L.)［J］. DNA Research：an International Journal for Rapid Publication of Reports on Genes and Genomes，2014，21(3)：231-241.
［27］Qin C，Yu C，Shen Y，et al. Whole-genome sequencing of cultivated and wild peppers provides insights into Capsicum domestication and specialization［J］. Proceedings of the National Academy of Sciences of the United States of America，2014，111(14)：5135-5140.
［28］Kitashiba H，Li F，Hirakawa H，et al. Draft sequences of the radish (Raphanus sativus L.) genome［J］. DNA Research：an International Journal for Rapid Publication of Reports on Genes and Genomes，2014，21(5)：481-490.
［29］Hirakawa H，Shirasawa K，Miyatake K，et al. Draft genome sequence of eggplant (Solanum melongena L.)：the representative solanum species indigenous to the Old World［J］. DNA Research：an International Journal for Rapid Publication of Reports on Genes and Genomes，2014，21(6)：649-660.
［30］Cai J，Liu X，Vanneste K，et al. The genome sequence of the orchid Phalaenopsis equestris［J］. Nature Genetics，2015，47(1)：65-72.
［31］Eid J，Fehr A，Gray J，et al. Real-time DNA sequencing from single polymerase molecules［J］. Science，2009，323(5910)：133-138.
［32］Rasko D A，Webster D R，Sahl J W，et al. Origins of the E. coli strain causing an outbreak of hemolytic-uremic syndrome in Germany［J］. The New England Journal of Medicine，2011，365(8)：709-717.
［33］Fukuoka H，Yamaguchi H，Nunome T，et al. Accumulation，functional annotation，and comparative analysis of expressed sequence tags in eggplant (Solanum melongena L.)，the third Pole of the genus Solanum species after tomato and potato［J］. Gene，2010，450(1/2)：76-84.
［34］Yu Y，Liang Y，Lv M，et al. Genome-wide identification and characterization of polygalacturonase genes in Cucumis sativus and Citrullus lanatus［J］. Plant Physiology and Biochemistry，2014，74：263-275.
［35］Qi J，Liu X，Shen D，et al. A genomic variation map provides insights into the genetic basis of cucumber domestication and diversity［J］. Nature Genetics，2013，45(12)：1510-1515.
［36］Shirasawa K，Fukuoka H，Matsunaga H，et al. Genome-wide association studies using single nucleotide polymorphism markers developed by re-sequencing of the genomes of cultivated tomato［J］. DNA Research：an International Journal for Rapid Publication of Reports on Genes and Genomes，2013，20(6)：593-603.
［37］Zenoni S，Ferrarini A，Giacomelli E，et al. Characterization of transcriptional complexity during berry development in Vitis vinifera using RNA-Seq［J］. Plant Physiology，2010，152(4)：1787-1795.
［38］Chagné D，Gasic K，Crowhurst R N，et al. Development of a set of SNP markers present in expressed genes of the Apple［J］. Genomics，2008，92(5)：353-358.
［39］Schnable P S，Ware D，Fulton R S，et al. The B73 maize genome：complexity，diversity，and dynamics［J］. Science，2009，326(5956)：1112-1115.
［40］Paterson A H，Bowers J E，Chapman B A. Ancient polyploidization predating divergence of the cereals，and its consequences for comparative genomics［J］. Proceedings of the National Academy of Sciences of the United States of America，2004，101(26)：9903-9908.

相似文献/References:

[1]惠林冲,陈微,张仕林,等.洋葱黄色条纹突变体叶绿体基因组测序及嵌合体验证[J].江苏农业科学,2023,51(20):43.
　Hui Linchong,et al.Sequencing and chimera verification of chloroplast genome of onion yellow stripe mutants[J].Jiangsu Agricultural Sciences,2023,51(02):43.

备注/Memo

备注/Memo:
收稿日期：2015-02-06
基金项目：江苏省“青蓝工程”项目；江苏省科技支撑计划(编号：BE2012361)；农业部种质资源保护项目(编号：2015NWB026)。
作者简介：倪晓鹏(1991—)，男，从事果树分子生物学研究。E-mail：2014104018@njau.edu.cn。
通信作者：高志红，博士，教授，从事果树种质资源与分子生物学研究。E-mail：gaozhihong@njau.edu.cn。
更新日期/Last Update: 2016-02-25