|本期目录/Table of Contents|

[1]张岚,袁敏,王振怡,等.无油樟与葡萄、拟南芥、水稻基因组的多倍化及共线性分析[J].江苏农业科学,2018,46(08):45-49.
 Zhang Lan,et al.Analysis of polyploidization and collinearity among genomes of Amborella,grape,Arabidopsis and rice[J].Jiangsu Agricultural Sciences,2018,46(08):45-49.
点击复制

无油樟与葡萄、拟南芥、水稻基因组
的多倍化及共线性分析
(PDF)
分享到:

《江苏农业科学》[ISSN:1002-1302/CN:32-1214/S]

卷:
第46卷
期数:
2018年08期
页码:
45-49
栏目:
生物技术
出版日期:
2018-04-20

文章信息/Info

Title:
Analysis of polyploidization and collinearity among genomes of Amborella,grape,Arabidopsis and rice
作者:
张岚 袁敏 王振怡 潘玉欣
华北理工大学生命科学学院/华北理工大学基因组学与计算生物学研究中心,河北唐山 063210
Author(s):
Zhang Lanet al
关键词:
无油樟葡萄多倍化同源性共线性
Keywords:
-
分类号:
Q941+.2;S188
DOI:
-
文献标志码:
A
摘要:
以无油樟、葡萄、拟南芥和水稻为研究对象,基于比较基因组学的研究方法,对物种基因组内和基因组间进行同源结构和共线性分析。结果表明,无油樟与葡萄基因组之间的同源共线性片段最长,葡萄基因组保留的共线性基因数最多(50.9%),无油樟与葡萄、水稻基因组之间保留的无油樟基因数最多(30.6%)。同时构建了多物种基因组联合比对图谱,明确基因组经历的多倍化事件对单、双子叶植物同源共线性基因的影响,为探讨单、双子叶植物的共同祖先以及被子植物的进化过程提供了重要的参考依据。
Abstract:
-

参考文献/References:

[1]Edger P P,Pires J C. Gene and genome duplications:the impact of dosagesensitivity on the fate of nuclear genes[J]. Chromosome Research,2009,17(5):699-717.
[2]Otto S P. The evolutionary consequences of polyploidy[J]. Cell,2007,131(3):452-462.
[3]Lyons E,Pedersen B,Kane J,et al. Finding and comparing syntenic regions among Arabidopsis and the outgroups papaya,poplar,and grape:CoGe with rosids[J]. Plant Physiology,2008,148(4):1772-1781.
[4]Amborella Genome Project. The Amborella genome and the evolution of flowering plants[J]. Science,2013,342(6165):1241089.
[5]Chamala S,Chanderbali A S,Der J P,et al. Assembly and validation of the genome of the nonmodel basal angiosperm Amborella[J]. Science,2013,342(6165):1516-1517.
[6]Rice D W,Alverson A J,Richardson A O,et al. Horizontal transfer of entire genomes via mitochondrial fusion in the angiosperm Amborella[J]. Science,2013,342(6165):1468-1473.
[7]Tang H B,Bowers J E,Wang X Y,et al. Synteny and collinearity in plant genomes[J]. Science,2008,320(5875):486-488.
[8]Jaillon O,Aury J M,Noel B,et al. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla[J]. Nature,2007,449(7161):463-467.
[9]Vision T J,Brown D G,Tanksley S D. The origins of genomic duplications in Arabidopsis[J]. Science,2000,290(5499):2114-2117.
[10]Barker M S,Vogel H,Schranz M E. Paleopolyploidy in the Brassicales:analyses of the cleome transcriptome elucidate the history of genome duplications in Arabidopsis and other Brassicales[J]. Genome Biology and Evolution,2009,1(1):391-399.
[11]Jiao Y N,Leebens-Mack J,Ayyampalayam S,et al. A genome triplication associated with early diversification of the core eudicots[J]. Genome Biol,2012,13(1):R3.
[12]Kaul S,Koo H L,Jenkins J,Analysis of the genome sequence of the flowering plant Arabidopsis thaliana[J]. Nature,2000,408(6814):796-815.
[13]Wang X Y,Shi X L,Hao B L,et al. Duplication and DNA segmental loss in the rice genome:implications for diploidization[J]. New Phytologist,2005,165(3):937-946.
[14]Wang X Y,Shi X L,Li Z,et al. Statistical inference of chromosomal homology based on gene colinearity and applications to Arabidopsis and rice[J]. BMC Bioinformatics,2006,7(1):447-459.
[15]Altschul S F,Gish W,Miller W,et al. Basic local alignment search tool[J]. Journal of Molecular Biology,1990,215(3):403-410.
[16]Tang H B,Wang X Y,Bowers J E,et al. Unraveling ancient hexaploidy through multiply-aligned angioserm gene maps[J]. Genome Research,2008,18(12):1944-1954.
[17]Wang X Y,Wang J P,Jin D C,et al. Genome alignment spanning major Poaceae lineages reveals heterogeneous evolutionary rates and alters inferred dates for key evolutionary events[J]. Molecular Plant,2015,8(6):885-898.
[18]Wang J P,Yu J X,Sun P C,et al. Comparative genomics analysis of rice and pineapple contributes to understand the chromosome number reduction and genomic changes in grasses[J]. Frontiers in Genetics,2016,7:174.
[19]Jiao Y N,Wickett N J,Ayyampalayam S,et al. Ancestral polyploidy in seed plants and angiosperms[J]. Nature,2011,473(7345):97-100.
[20]Wang X Y,Tang H B,Paterson A H. Seventy million years of concerted evolution of a homoeologous chromosome pair,in parallel,in major Poaceae lineages[J]. Plant Cell,2011,23(1):27-37.

相似文献/References:

[1]芮东明,刘亚柏,刘吉祥,等.句容市葡萄产业现状及葡萄栽培技术特点[J].江苏农业科学,2013,41(04):136.
[2]毛妮妮,刘照亭,刘伟忠,等.观赏性葡萄开屏式培植技术[J].江苏农业科学,2014,42(12):224.
 Mao Nini,et al.Spreading tail cultivation techniques of ornamental grapes[J].Jiangsu Agricultural Sciences,2014,42(08):224.
[3]刘伟忠,毛妮妮,郭建,等.醉金香葡萄的引种表现及省力化栽培技术[J].江苏农业科学,2015,43(12):199.
 Liu Weizhong,et al.Introduction performance and laborsaving cultural techniques of “Zuijinxiang” grape[J].Jiangsu Agricultural Sciences,2015,43(08):199.
[4]汪纯凤,王勇,陈英,等.抗葡萄白腐病菌放线菌株的筛选、纯化与鉴定[J].江苏农业科学,2015,43(12):166.
 Wang Chunfeng,et al.Screening,purification and identification of Actinomycetes with resistance to Coniothyrium diplodiella[J].Jiangsu Agricultural Sciences,2015,43(08):166.
[5]陈剑侠.葡萄叶片和果实对硒的吸收和累积特性[J].江苏农业科学,2013,41(07):154.
 Chen Jianxia.Absorption and accumulation of selenium in leaves and fruits of grape during different growth stages[J].Jiangsu Agricultural Sciences,2013,41(08):154.
[6]付瑞敏,韩鸿鹏,张丽琴,等.葡萄霜霉病和白粉病拮抗菌的分离、鉴定和He-Ne 激光诱变[J].江苏农业科学,2013,41(08):122.
 Fu Ruimin,et al.Isolation and identification of antagonistic bacteria against grape downy mildew and powdery mildew,and its mutation under He-Ne laser irradiation[J].Jiangsu Agricultural Sciences,2013,41(08):122.
[7]吕良玉,温晓蕾,杨娜娜,等.葡萄生长后期不同叶位与霜霉病发病级下叶片的光合特性[J].江苏农业科学,2013,41(09):141.
 Lv Liangyu,et al.Photosynthetic characteristics of leaves with different leaf positions and grades of downy mildew in late growth stage of grape[J].Jiangsu Agricultural Sciences,2013,41(08):141.
[8]钱亚明,吴伟民,赵密珍,等.江苏5个葡萄试验示范基地土壤肥力状况调查分析[J].江苏农业科学,2013,41(09):145.
 Qian Yaming,et al.Investigation and analysis of soil fertility in five grape pilot demonstration bases of Jiangsu Province[J].Jiangsu Agricultural Sciences,2013,41(08):145.
[9]王西成,钱亚明,赵密珍,等.江苏地区设施葡萄常用品种需冷量研究[J].江苏农业科学,2013,41(10):120.
 Wang Xicheng,et al.Study on chilling requirements of common grape varieties cultivated in greenhouse in Jiangsu Province[J].Jiangsu Agricultural Sciences,2013,41(08):120.
[10]李鹏程,郭绍杰,李铭,等.新型复混调节剂对葡萄生长及果实性状的影响[J].江苏农业科学,2013,41(12):166.
 Li Pengcheng,et al.Effects of new compound modifier on growth and fruit characters of Vitis amurensis Rupr.[J].Jiangsu Agricultural Sciences,2013,41(08):166.

备注/Memo

备注/Memo:
收稿日期:2017-07-19
基金项目:华北理工大学青年科学研究基金(编号:Z201528)。
作者简介:张岚(1983—),女,山西长治人,硕士,讲师,主要从事植物比较基因组学研究。E-mail:zhanglan1374@sohu.com。
通信作者:潘玉欣,博士,副教授,主要从事植物学研究。E-mail:panyu-xin@163.com。
更新日期/Last Update: 2018-04-20