|本期目录/Table of Contents|

[1]郑佳秋,吴永成,王薇薇,等.植物逆境相关长链非编码RNA的研究进展[J].江苏农业科学,2020,48(04):19-23.
 Zheng Jiaqiu,et al.Research progress on plant stress-related long non-coding RNA[J].Jiangsu Agricultural Sciences,2020,48(04):19-23.
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植物逆境相关长链非编码RNA的研究进展(PDF)
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《江苏农业科学》[ISSN:1002-1302/CN:32-1214/S]

卷:
第48卷
期数:
2020年第04期
页码:
19-23
栏目:
专论与综述
出版日期:
2020-03-25

文章信息/Info

Title:
Research progress on plant stress-related long non-coding RNA
作者:
郑佳秋 吴永成 王薇薇 梅燚 祖艳侠 郭军 刘云芬
江苏沿海地区农业科学研究所,江苏盐城 224002
Author(s):
Zheng Jiaqiuet al
关键词:
lncRNA植物形态生物胁迫非生物胁迫
Keywords:
-
分类号:
Q943.2
DOI:
-
文献标志码:
A
摘要:
植物长链非编码RNA(long non-coding RNA,lncRNA)是一类广泛存在的长度大于200 nt的非编码RNA调控分子,通过目标模拟、转录干扰、甲基化等机制调控真核生物基因表达。植物体内的许多lncRNA受外界胁迫的诱导或抑制,并作用于逆境相关基因,影响植物形态和生理生化进而产生对胁迫的应答。从植物lncRNA的合成、分子水平的作用方式、与植物生物和非生物胁迫逆境的响应机制等方面阐述了长链非编码RNA参与调控植物的抗逆机制,并提出了今后的研究方向,以期为植物逆境应对及抗逆新品种选育提供理论依据。
Abstract:
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参考文献/References:

[1]Laurent S G,Wahlestedt C,Kapranov P. The landscape of long noncoding RNA classification[J]. Trends in Genetics,2015,31(5):239-251.
[2]Kornienko A E,Guenzl P M,Barlow D P,et al. Gene regulation by the act of long non-coding RNA transcription[J]. BMC Biology,2013,11:59.
[3]Okazaki Y,Furuno M,Kasukawa T,et al. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs[J]. Nature,2002,420(6915):563-573.
[4]Li L,Eichten S R,Shimizu R,et al. Genome-wide discovery and characterization of maize long non-coding RNAs[J]. Genome Biology,2014,15:R40.
[5]Zhang Y C,Liao J Y,Li Z Y,et al. Genome-wide screening and functional analysis identify a large number of long noncoding RNAs involved in the sexual reproduction of rice[J]. Genome Biology,2014,15:512.
[6]Zhao Y,Li H,Fang S S,et al. NONCODE 2016:an informative and valuable data source of long non-coding RNAs[J]. Nucleic Acids Research,2016,44(D1):D203-D208.
[7]Zhu Q Q,Li Z A,He Y X,et al. Research progress on epigenetic and flowering-time regulation[J]. Acta Horticulturae Sinica,2013,40(9):1787-1794.
[8]Swiezewski S,Liu F Q,Magusin A,et al. Cold-induced silencing by long antisense transcripts of an Arabidopsis Polycomb target[J]. Nature,2009,462(7274):799-802.
[9]Liu J,Jung C,Xu J,et al. Genome-wide analysis uncovers regulation of long intergenic noncoding RNAs in Arabidopsis[J]. Plant Cell,2012,24(11):4333-4345.
[10]Rowley M J,Bhmdorfer G,Wierzbicki A T. Analysis of long non-coding RNAs produced by a specialized RNA polymerase in Arabidopsis thaliana[J]. Methods,2013,63(2):160-169.
[11]Bardou F,Ariel F,Simpson C G,et al. Long noncoding RNA modulates alternative splicing regulators in Arabidopsis[J]. Developmental Cell,2014,30(2):166-176.
[12]Plewka P,Thompson A,Szymanski M,et al. A stable tRNA-like molecule is generated from the long noncoding RNA GUT15 in Arabidopsis[J]. RNA Biology,2018,15(6):726-738.
[13]Ponting C P,Oliver P L,Reik W. Evolution and functions of long noncoding RNAs[J]. Cell,2009,136(4):629-641.
[14]Wang K C,Chang H Y. Molecular mechanisms of long noncoding RNAs[J]. Molecular Cell,2011,43(6):904-914.
[15]Guttman M,Rinn J L. Modular regulatory principles of large non-coding RNAs[J]. Nature,2012,482(7385):339-346.
[16]Novikova I V,Hennelly S P,Sanbonmatsu K Y. Structural architecture of the human long non-coding RNA,steroid receptor RNA activator[J]. Nucleic Acids Research,2012,40(11):5034-5051.
[17]Yang J R,Zhang J. Human long noncoding RNAs are substantially less folded than messenger RNAs[J]. Molecular Biology and Evolution,2015,32(4):970-977.
[18]Wu J,Okada T,Fukushima T,et al. A novel hypoxic stress-responsive long non-coding RNA transcribed by RNA polymerase Ⅲ in Arabidopsis[J]. RNA Biology,2012,9(3):302-313.
[19]Wang H,Chung P J,Liu J,et al. Genome-wide identification of long noncoding natural antisense transcripts and their responses to light in Arabidopsis[J]. Genome Research,2014,24(3):444-453.
[20]Wunderlich M,Gross-Hardt R,Schffl F. Heat shock factor HSFB2a involved in gametophyte development of Arabidopsis thaliana and its expression is controlled by a heat-inducible long non-coding antisense RNA[J]. Plant Molecular Biology,2014,85(6):541-550.
[21]Yuan J P,Zhang Y,Dong J S,et al. Systematic characterization of novel lncRNAs responding to phosphate sarvation in Arabidopsis thaliana[J]. BMC Genomics,2016,17:655.
[22]Xin M M,Wang Y,Yao Y Y,et al. Identification and characterization of wheat long non-protein coding RNAs responsive to powdery mildew infection and heat stress by using microarray analysis and SBS sequencing[J]. BMC Plant Biology,2011,11:61.
[23]Qi X,Xie S J,Liu Y W,et al. Genome-wide annotation of genes and noncoding RNAs of foxtail millet in response to simulated drought stress by deep sequencing[J]. Plant Molecular Biology,2013,83(4/5):459-473.
[24]Muthusamy M,Uma S,Backiyarani S,et al. Genome-wide screening for novel,drought stress-responsive long non-coding RNAs in drought-stressed leaf transcriptome of drought-tolerant and -susceptible banana (Musa spp.) cultivars using Illumina high-throughput sequencing[J]. Plant Biotechnology Reports,2015,9(5):279-286.
[25]Shuai P,Liang D,Tang S,et al. Genome-wide identification and functional prediction of novel and drought-responsive lincRNAs in Populus trichocarpa[J]. Journal of Experimental Botany,2014,65(17):4975-4983.
[26]Zhang W,Han Z X,Guo Q L,et al. Identification of maize long non-coding RNAs responsive to drought stress[J]. PLoS One,2014,9(6):e98958.
[27]Wu B,Li Y,Yan H X,et al. Comprehensive transcriptome analysis reveals novel genes involved in cardiac glycoside biosynthesis and mlncRNAs associated with secondary metabolism and stress response in Digitalis purpurea[J]. BMC Genomics,2012,13:15.
[28]Aversano R,Contaldi F,Ercolano M R,et al. The Solanum commersonii genome sequence provides insights into adaptation to stress conditions and genome evolution of wild potato relatives[J]. Plant Cell,2015,27(4):954-968.
[29]Postnikova O A,Nemchinov L G. Natural antisense transcripts associated with salinity response in alfalfa[J]. The Plant Genome,2015,8(2):1-5.
[30]Xu Q,Song Z H,Zhu C Y,et al. Systematic comparison of lncRNAs with protein coding mRNAs in population expression and their response to environmental change[J]. BMC Plant Biology,2017,17:42.
[31]Qin T,Zhao H,Cui P,et al. A nucleus-localized long non-coding RNA enhances drought and salt strss tolerance[J]. Plant Physiology,2017,175(3):1321-1336.
[32]Franco-Zorrilla J M,Valli A,Todesco M,et al. Target mimicry provides a new mechanism for regulation of microRNA activity[J]. Nature Genetics,2007,39(8):1033-1037.
[33]毋若楠,王红,杨成成,等. 拟南芥lncRNA-At5NC056820过表达载体构建及其转基因植株的抗旱性研究[J]. 西北植物学报,2017,37(10):1904-1909.
[34]Wang T Z,Liu M,Zhao M G,et al. Identification and characterization of long non-coding RNAs involved in osmotic and salt stress in Medicago truncatula,using genome-wide high-througput sequencing[J]. BMC Plant Biology,2015,15:131.
[35]Li S X,Yu X,Lei N,et al.Genome-wide identification and functional prediction of cold and/or drought- responsive lncRNAs in cassava[J]. Scientific Reports,2017,7:46795.
[36]刘伟婳. 基于全转录组学的野生蕉(Musa itinerans)低温胁迫响应机制研究[D]. 福州:福建农林大学,2018.
[37]Ben Amor B,Wirth S,Merchan F,et al. Novel long non-protein coding RNAs involved in Arabidopsis differentiation and stress responses[J]. Genome Research,2009,19(1):57-69.
[38]Cui J,Luan Y S,Jiang N,et al. Comparative transcriptome analysis between resistant and susceptible tomato allows the identification of lncRNA16397 conferring resistance to Phytophthora infestans by co-expressing glutaredoxin[J]. Plant Journal,2017,89(3):577-589.
[39]Kwenda S,Brich P R J,Moleleki L N. Genome-wide identification of potato long intergenic noncoding RNAs responsive to Pectobacterium carotovorum subspecies brasiliense infection[J]. BMC Genomics,2016,17:614.
[40]Joshi R K,Megha S,Basu U,et al. Genome wide identification and functional prediction of long non-coding RNAs responsive to Sclerotinia sclerotiorum infection in Brassica napus[J]. PLoS One,2016,11(7):e0158784.
[41]Zhu Q H,Stephen S,Taylor J,et al. Long noncoding RNAs responsive to Fusarium oxysporum infection in Arabidopsis thaliana[J]. New Phytologist,2014,201(2):574-584.
[42]Wang Z P,Liu Y F,Li L,et al. Whole transcriptome sequencing of Pseudomonas syringae pv. actinidiae-infected kiwifruit plants reveals species-specific interaction between long non-coding RNA and coding genes[J]. Scientific Reports,2017,7(1):4910.
[43]Zhang H,Chen X E,Wang C Y,et al. Long non-coding genes implicated in response to stripe rust pathogen stress in wheat (Triticum aestivum L.)[J]. Molecular Biology Reports,2013,40(11):6245-6253.
[44]Zhang L,Wang M J,Li N N,et al. Long noncoding RNAs involve in resistance to Verticillium dahliae,a fungal disease in cotton[J]. Plant Biotechnology Journal,2018,16(6):1172-1185.
[45]Flórez-Zapata N M V,Reyes-Valdés M H,Martínez O. Long non-coding RNAs are major contributors to transcriptome changes in sunflower meiocytes with different recombination rates[J]. BMC Genomics,2016,17:490.
[46]Kang C Y,Liu Z C. Global identification and analysis of long non-coding RNAs in diploid strawberry Fragaria vesca during flower and fruit development[J]. BMC Genomics,2015,16:815.
[47]Song X M,Liu G F,Huang Z N,et al. Temperature expression patterns of genes and their co-expression with LncRNAs revealed by RNA-Seq in non-heading Chinese cabbage[J]. BMC Genomics,2016,17:297.
[48]Kerr S C,Gaiti F,Beveridge C A,et al. De novo transcriptome assembly reveals high transcriptional complexity in Pisum sativum axillary buds and shows rapid changes in expression of diurnally regulated genes[J]. BMC Genomics,2017,18(1):221.
[49]Hao Z Q,Fan C Y,Cheng T,et al. Genome-wide identification,characterization and evolutionary analysis of long intergenic noncoding RNAs in cucumber[J]. PLoS One,2015,10(3):e0121800.
[50]Lin J K,Wilson I W,Ge G P,et al . Whole transcriptome analysis of three leaf stages in two cultivars and one of their F1 hybrid of Camellia sinensis L. with differing EGCG content[J]. Tree Genetics & Genomes,2017,13:13.
[51]Vitulo N,Forcato C,Carpinelli E C,et al. A deep survey of alternative splicing in grape reveals changes in the splicing machinery related to tissue,stress condition and genotype[J]. BMC Plant Biology,2014,14:99.
[52]Chen J H,Quan M Y,Zhang D Q. Genome-wide identification of novel long non-coding RNAs in Populus tomentosa tension wood,opposite wood and normal wood xylem by RNA-seq[J]. Planta,2015,241(1):125-143.
[53]Wang X,Ai G,Zhang C L,et al. Expression and diversification analysis reveals transposable elements play important roles in the origin of Lycopersicon-specific lncRNAs in tomato[J]. New Phytologist,2016,209(4):1442-1455.
[54]Mercer T R,Dinger M E,Mattick J S. Long non-coding RNAs:insights into functions[J]. Nature Reviews Genetics,2009,10(3):155-159.
[55]Zhu Q H,Wang M B. Molecular functions of long non-coding RNAs in plants[J]. Genes,2012,3(1):176-190.
[56]Rinn J L,Chang H Y. Genome regulation by long noncoding RNAs[J]. Annual Review of Biochemistry,2012,81:145-166.
[57]Au P C,Zhu Q H,Dennis E S,et al. Long non-coding RNA-mediated mechanisms Independent of the RNAi pathway in animals and plants[J]. RNA Biology,2011,8(3):404-414.

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备注/Memo

备注/Memo:
收稿日期:2018-12-17
基金项目:江苏省自然科学基金(编号:BK20171272);江苏省农业重大新品种创制项目(编号:PZCZ201715)。
作者简介:郑佳秋(1982—),女,辽宁沈阳人,硕士,副研究员,主要从事辣椒育种及抗逆方面研究。E-mail:nky8236@163.com。
通信作者:郭军,研究员,主要从事蔬菜育种方面研究。E-mail:guojunyc@126.com。
更新日期/Last Update: 2020-02-20