|本期目录/Table of Contents|

[1]王茜月,管飘萍,陈诗涵,等.1株溶血色杆菌的分离鉴定与基因组分析[J].江苏农业科学,2022,50(12):42-50.
 Wang Xiyue,et al.Isolation, identification and genome analysis of a strain of Chromobacterium haemolyticum[J].Jiangsu Agricultural Sciences,2022,50(12):42-50.
点击复制

1株溶血色杆菌的分离鉴定与基因组分析(PDF)
分享到:

《江苏农业科学》[ISSN:1002-1302/CN:32-1214/S]

卷:
第50卷
期数:
2022年第12期
页码:
42-50
栏目:
生物技术
出版日期:
2022-06-20

文章信息/Info

Title:
Isolation, identification and genome analysis of a strain of Chromobacterium haemolyticum
作者:
王茜月1管飘萍12陈诗涵12黄紫贝12郭鑫12赵以恒1罗健雅1王欣宇1崔颢月1刘金彪1王海燕3刘文博12
1.扬州大学兽医学院,江苏扬州 225009; 2.江苏省动物重要疫病与人兽共患病防控协同创新中心,江苏扬州 225009;3.江苏农牧科技职业学院,江苏泰州225300
Author(s):
Wang Xiyueet al
关键词:
池塘溶血色杆菌全基因组序列比较基因组分析
Keywords:
-
分类号:
S182
DOI:
-
文献标志码:
A
摘要:
从池塘中分离、纯化了1株具有极强溶血活性的革兰氏阴性杆菌BB2,在TSA培养基上菌落呈灰色、半透明圆形,经16S rRNA基因序列分析确定为色杆菌属,但无法确定到种;进一步全基因组测序结果表明,该菌株与GenBank中唯一的1株稻根色杆菌基因组同源性最高,但生物学特性又不一致。文献逆索发现其命名为稻根色杆菌主要是由于其分离于水稻根部,这对分类造成了困惑。最终依据细菌形态特征、生理生化特性、16S rRNA和全基因组序列分析及文献分析等综合信息,确定分离菌BB2为溶血色杆菌,这提醒研究者们在细菌鉴定时应谨慎使用GenBank数据序列数据,一定要对相关参考文献进行全面认真研读,获取必要的证据,为最终分类提供科学依据。本研究也为进一步研究该分离株的生物学特性和应用提供了参考和基础。
Abstract:
-

参考文献/References:

[1]Han X Y,Han F S,Segal J. Chromobacterium haemolyticum sp. nov.,a strongly haemolytic species[J]. International Journal of Systematic and Evolutionary Microbiology,2008,58(6):1398-1403.
[2]Kanamori H,Aoyagi T,Kuroda M,et al. Chromobacterium haemolyticum pneumonia associated with near-drowning and river water,Japan[J]. Emerging Infectious Diseases,2020,26(9):2186-2189.
[3]Takenaka R,Nureki S I,Ueno T,et al. Chromobacterium haemolyticum pneumonia possibly due to the aspiration of runoff water[J]. Japanese Journal of Infectious Diseases,2015,68(6):526-529.
[4]Zhou S,Guo X,Wang H M,et al. Chromobacterium rhizoryzae sp. nov.,isolated from rice roots[J]. International Journal of Systematic and Evolutionary Microbiology,2016,66(10):3890-3896.
[5]Bajaj A,Kumar A,Yadav S,et al. Isolation and characterization of a novel Gram-negative bacterium Chromobacterium alkanivorans sp. nov.,strain IITR-71T degrading halogenated alkanes[J]. International Journal of Systematic and Evolutionary Microbiology,2016,66(12):5228-5235.
[6]Menezes C B A,Tonin M F,Corrêa D B A,et al. Chromobacterium amazonense sp. nov. isolated from water samples from the Rio Negro,Amazon,Brazil[J]. Antonie Van Leeuwenhoek,2015,107(4):1057-1063.
[7]Young C C,Arun A B,Lai W A,et al. Chromobacterium aquaticum sp. nov.,isolated from spring water samples[J]. International Journal of Systematic and Evolutionary Microbiology,2008,58(4):877-880.
[8]Moss M O,Ryall C,Logan N A. The classification and characterization of chromobacteria from a lowland river[J]. Journal of General Microbiology,1978,105(1):11-21.
[9]Kmpfer P,Glaeser S P,Soby S D. Chromobacterium pseudoviolaceum is a later heterotypic synonym of Chromobacterium violaceum Bergonzini 1880[J]. International Journal of Systematic and Evolutionary Microbiology,2018,68(9):2967-2968.
[10]Blackburn M B,Farrar R R Jr,Sparks M E,et al. Chromobacterium paludis sp. nov.,a novel bacterium isolated from a Chesapeake Bay marsh[J]. International Journal of Systematic and Evolutionary Microbiology,2020,70(12):6142-6146.
[11]Soby S D,Gadagkar S R,Contreras C,et al. Chromobacterium vaccinii sp. nov.,isolated from native and cultivated cranberry (Vaccinium macrocarpon Ait.) bogs and irrigation ponds[J]. International Journal of Systematic and Evolutionary Microbiology,2013,63(Pt 5):1840-1846.
[12]Martin P A W,Gundersen-Rindal D,Blackburn M,et al. Chromobacterium subtsugae sp. nov.,a betaproteobacterium toxic to Colorado potato beetle and other insect pests[J]. International Journal of Systematic and Evolutionary Microbiology,2007,57(5):993-999.
[13]修云芳,邵良平,李碧春,等. 紫色色杆菌感染小熊猫引起肺炎的临床调查[J]. 兽类学报,2011,31(1):108-112.
[14]Okada M,Inokuchi R,Shinohara K,et al. Chromobacterium haemolyticum-induced bacteremia in a healthy young man[J]. BMC Infectious Diseases,2013,13:406.
[15]Tanpowpong P,Charoenmuang R,Apiwattanakul N. First pediatric case of Chromobacterium haemolyticum causing proctocolitis[J]. Pediatrics International,2014,56(4):615-617.
[16]Ramasamy D,Mishra A K,Lagier J C,et al. A polyphasic strategy incorporating genomic data for the taxonomic description of novel bacterial species[J]. International Journal of Systematic and Evolutionary Microbiology,2014,64(Pt 2):384-391.
[17]Tindall B J,Rosselló-Móra R,Busse H J,et al. Notes on the characterization of prokaryote strains for taxonomic purposes[J]. International Journal of Systematic and Evolutionary Microbiology,2010,60(Pt 1):249-266.
[18]Chun J,Oren A,Ventosa A,et al. Proposed minimal standards for the use of genome data for the taxonomy of prokaryotes[J]. International Journal of Systematic and Evolutionary Microbiology,2018,68(1):461-466.
[19]Meier-Kolthoff J P,Auch A F,Klenk H P,et al. Genome sequence-based species delimitation with confidence intervals and improved distance functions[J]. BMC Bioinformatics,2013,14:60.
[20]Wick R R,Judd L M,Gorrie C L,et al. Unicycler:Resolving bacterial genome assemblies from short and long sequencing reads[J]. PLoS Computational Biology,2017,13(6):e1005595.
[21]Li H,Durbin R. Fast and accurate long-read alignment with Burrows-Wheeler transform[J]. Bioinformatics,2010,26(5):589-595.
[22]Zhou Y,Liang Y J,Lynch K H,et al. PHAST:a fast phage search tool[J]. Nucleic Acids Research,2011,39(Web Server issue):347-352.
[23]Tarailo-Graovac M,Chen N S. Using repeatmasker to identify repetitive elements in genomic sequences[M]//Current protocols in bioinformatics. New York:John Wiley & Sons,2009.
[24]Bertelli C,Laird M R,Williams K P,et al. IslandViewer 4:expanded prediction of genomic Islands for larger-scale datasets[J]. Nucleic Acids Research,2017,45(W1):30-35.
[25]Alcock B P,Raphenya A R,Lau T T Y,et al. CARD 2020:antibiotic resistome surveillance with the comprehensive antibiotic resistance database[J]. Nucleic Acids Research,2019,48(D1):517-525.
[26]Darling A C E,Mau B,Blattner F R,et al. Mauve:multiple alignment of conserved genomic sequence with rearrangements[J]. Genome Research,2004,14(7):1394-1403.
[27]Xu L,Dong Z B,Fang L,et al. OrthoVenn2:a web server for whole-genome comparison and annotation of orthologous clusters across multiple species[J]. Nucleic Acids Research,2019,47(W1):52-58.
[28]Stackebrandt E,Frederiksen W,Garrity G M,et al. Report of the ad hoc committee for the re-evaluation of the species definition in bacteriology[J]. International Journal of Systematic and Evolutionary Microbiology,2002,52(Pt 3):1043-1047.
[29]Stackebrandt E,Ebers J. Taxonomic parameters revisited:Tarnished gold standards[J]. Microbiology Today,2006,8(4):6-9.
[30]Rosselló-Mora R. DNA-DNA reassociation methods applied to microbial taxonomy and their critical evaluation molecular identification,systematics,and population structure of prokaryotes[M]. Berlin:Springer,2006:23-50.

相似文献/References:

[1]李义,何沅滨,陈亚军,等.高温季节泥鳅养殖池塘主要水质因子变化规律[J].江苏农业科学,2015,43(03):221.
 Li Yi,et al.Variation of major water quality factors of loach culture pond in hot season[J].Jiangsu Agricultural Sciences,2015,43(12):221.
[2]孙猛,魏代艳,赵吉睿,等.天津市海水养殖废水排放的分布及水质评估[J].江苏农业科学,2020,48(19):263.
 Sun Meng,et al.Distribution and water quality assessment of mariculture wastewater discharge in Tianjin City[J].Jiangsu Agricultural Sciences,2020,48(12):263.

备注/Memo

备注/Memo:
收稿日期:2021-08-16
基金项目:江苏高校优势学科建设工程(2018)。
作者简介:王茜月(1999—),硕士,江苏泰州人,主要从事传染病流行病学研究。E-mail:Bioyusy@outlook.com。
通信作者:刘文博(1975—),男,博士,副教授,主要从事传染病防控。E-mail:lwb@yzu.edu.cn。
更新日期/Last Update: 2022-06-20