|本期目录/Table of Contents|

[1]李永峰,王克华,窦套存,等.蛋鸡资源群体的小肠质量全基因组关联分析[J].江苏农业科学,2022,50(22):165-170.
 Li Yongfeng,et al.Genome-wide association analysis for small intestine weight of laying hens[J].Jiangsu Agricultural Sciences,2022,50(22):165-170.
点击复制

蛋鸡资源群体的小肠质量全基因组关联分析(PDF)
分享到:

《江苏农业科学》[ISSN:1002-1302/CN:32-1214/S]

卷:
第50卷
期数:
2022年第22期
页码:
165-170
栏目:
畜牧兽医与水产蚕桑
出版日期:
2022-11-20

文章信息/Info

Title:
Genome-wide association analysis for small intestine weight of laying hens
作者:
李永峰王克华窦套存胡玉萍郭军王星果马猛曲亮
江苏省家禽科学研究所,江苏扬州 225125
Author(s):
Li Yongfenget al
关键词:
蛋鸡小肠质量GWAS遗传结构
Keywords:
-
分类号:
S831.2
DOI:
-
文献标志码:
A
摘要:
小肠是鸡重要的营养消化吸收器官,在蛋鸡生长和生产发挥重要作用,小肠质量是反映肠道发育情况的重要生理指标,有必要对其遗传结构进行研究。利用白来航鸡与东乡绿壳蛋鸡杂交构建F2代资源群体,采用600K鸡SNP芯片对F2代1 512羽个体进行基因型检测,通过PLINK软件对小肠质量性状进行全基因组关联分析(GWAS)。结果显示,十二指肠、空肠和回肠的遗传力分别为0.32、0.28、0.26,说明小肠质量表现出中等遗传力水平。GWAS共鉴定出185、201、36个SNP分别与十二指肠、空肠、回肠质量显著相关(共422个SNP),其中,421个SPN位于1号染色体166.6~173.2 Mb区域,说明该区域与小肠质量关系密切。共有28个SNP与3段小肠质量均显著相关,其中,6个SNP位于对应4个候选基因(FOXO1、CKAP2、CAB39L和MRPS31)的内含子区,它们可能与小肠质量密切相关。通过GWAS分析,初步筛选出与蛋鸡小肠质量性状相关的6个SNP和4个候选基因,可为性状的遗传机制解析和分子育种提供理论依据。
Abstract:
-

参考文献/References:

[1] de Verdal H,Narcy A,Bastianelli D,et al. Improving the efficiency of feed utilization in poultry by selection.1.Genetic parameters of anatomy of the gastro-intestinal tract and digestive efficiency[J]. BMC Genetics,2011,12:59.
[2]王星果,曲亮,卢建,等. 蛋鸡资源群体的盲肠长度全基因组关联分析[J]. 西南大学学报(自然科学版),2018,40(9):35-41.
[3]Zhang H,Wang Z P,Wang S Z,et al. Progress of genome wide association study in domestic animals[J]. Journal of Animal Science and Biotechnology,2012,3(1):26.
[4]Hirschhorn J N,Daly M J. Genome-wide association studies for common diseases and complex traits[J]. Nature Reviews Genetics,2005,6(2):95-108.
[5]Purcell S,Neale B,Todd-Brown K,et al. PLINK:a tool set for whole-genome association and population-based linkage analyses[J]. American Journal of Human Genetics,2007,81(3):559-575.
[6]Browning B L,Browning S R. A unified approach to genotype imputation and haplotype-phase inference for large data sets of trios and unrelated individuals[J]. The American Journal of Human Genetics,2009,84(2):210-223.
[7]Gao X Y,Becker L C,Becker D M,et al. Avoiding the high Bonferroni penalty in genome-wide association studies[J]. Genetic Epidemiology,2010,34(1):100-105.
[8]Zhou X,Stephens M. Genome-wide efficient mixed-model analysis for association studies[J]. Nature Genetics,2012,44(7):821-824.
[9]Zhao J H. gap:genetic analysis package[J]. Journal of Statistical Software,2007,23(8):1-18.
[10]Yang J,Lee S H,Goddard M E,et al. GCTA:a tool for genome-wide complex trait analysis[J]. The American Journal of Human Genetics,2011,88(1):76-82.
[11]Lee S H,DeCandia T R,Ripke S,et al. Estimating the proportion of variation in susceptibility to schizophrenia captured by common SNPs[J]. Nature Genetics,2012,44(3):247-250.
[12]McLaren W,Pritchard B,Rios D,et al. Deriving the consequences of genomic variants with the Ensembl API and SNP Effect Predictor[J]. Bioinformatics,2010,26(16):2069-2070.
[13]Kinsella R J,Khri A,Haider S,et al. Ensembl BioMarts:a hub for data retrieval across taxonomic space[J]. Database,2011,2011(10.1093):database.
[14]Do D N,Ostersen T,Strathe A B,et al. Genome-wide association and systems genetic analyses of residual feed intake,daily feed consumption,backfat and weight gain in pigs[J]. BMC Genetics,2014,15:27.
[15]Zhang W C,Bin Y,Zhang J J,et al. Genome-wide association studies for fatty acid metabolic traits in five divergent pig populations[J]. Scientific Reports,2016,6:24718.
[16]Sherman E L,Nkrumah J D,Moore S S. Whole genome single nucleotide polymorphism associations with feed intake and feed efficiency in beef cattle[J]. Journal of Animal Science,2010,88(1):16-22.
[17]Manca E,Cesarani A,Gaspa G,et al. Use of the multivariate discriminant analysis for genome-wide association studies in cattle[J]. Animals,2020,10(8):1300.
[18]Tran T S,Narcy A,Carré B,et al. Detection of QTL controlling digestive efficiency and anatomy of the digestive tract in chicken fed a wheat-based diet[J]. Genetics,Selection,Evolution,2014,46(1):25.
[19]Yi G Q,Shen M M,Yuan J W,et al. Genome-wide association study dissects genetic architecture underlying longitudinal egg weights in chickens[J]. BMC Genomics,2015,16:746.
[20]Li S M,Wang X G,Qu L,et al. Genome-wide association studies for small intestine length in an F2 population of chickens[J]. Italian Journal of Animal Science,2018,17(2):294-300.
[21]Kim J J,Li P P,Huntley J,et al. FoxO1 haploinsufficiency protects against high-fat diet-induced insulin resistance with enhanced peroxisome proliferator-activated receptor gamma activation in adipose tissue[J]. Diabetes,2009,58(6):1275-1282.
[22]Pajvani U B,Shawber C J,Samuel V T,et al. Inhibition of Notch signaling ameliorates insulin resistance in a FoxO1-dependent manner[J]. Nature Medicine,2011,17(8):961-967.
[23]赵念. 酪蛋白酶解物和胰岛素对新生IUGR仔猪肠道生长发育的影响[D]. 南京:南京农业大学,2007:46-63.
[24]赵念,薛萍,杜伟,等. 添加胰岛素对新生宫内生长迟缓仔猪肠道生长发育的影响[J]. 畜牧与兽医,2008,40(7):52-55.
[25]Yoo B H,Park C H,Kim H J,et al. CKAP2 is necessary to ensure the faithful spindle bipolarity in a dividing diploid hepatocyte[J]. Biochemical and Biophysical Research Communications,2016,473(4):886-893.
[26]陈湘婷,谢洁,孟倩丽. CKAP2对高糖培养的人视网膜血管内皮细胞的作用研究[J]. 循证医学,2020,20(2):96-102.
[27]张昌生,张学贞,韩宗明,等. 沉默细胞骨架相关蛋白2抑制肝癌细胞增殖和迁移并促进细胞凋亡[J]. 中南大学学报(医学版),2020,45(4):365-371.
[28]Cui X X,Yang C H,Kang L,et al. Expression pattern and regulation of head-to-head genes Vps36 and Ckap2 during chicken follicle development[J]. Frontiers of Agricultural Science and Engineering,2014,1(2):130.
[29]Hawley S A,Boudeau J,Reid J L,et al. Complexes between the LKB1 tumor suppressor,STRAD alpha/beta and MO25 alpha/beta are upstream kinases in the AMP-activated protein kinase cascade[J]. Journal of Biology,2003,2(4):28.
[30]Minokoshi Y,Alquier T,Furukawa N,et al. AMP-kinase regulates food intake by responding to hormonal and nutrient signals in the hypothalamus[J]. Nature,2004,428(6982):569-574.
[31]Proszkowiec-Weglarz M,Richards M P,Ramachandran R,et al. Characterization of the AMP-activated protein kinase pathway in chickens[J]. Comparative Biochemistry and Physiology(Part B:Biochemistry and Molecular Biology),2006,143(1):92-106.

相似文献/References:

[1]李林枫,李嫔,唐志刚,等.载锌沸石对蛋鸡鸡蛋品质和消化功能的影响[J].江苏农业科学,2014,42(08):201.
 Li Linfeng,et al.Effects of zinc-bearing zeolite on egg quality and digestive function of laying hens[J].Jiangsu Agricultural Sciences,2014,42(22):201.
[2]时凯,陈长宽,卞红春,等.不同养殖模式及光照度对蛋鸡产蛋率的影响[J].江苏农业科学,2016,44(02):254.
 Shi Kai,et al.Effects of different culture mode and light intensity on laying rate of layer[J].Jiangsu Agricultural Sciences,2016,44(22):254.
[3]张楠楠,白康,陈辉,等.外源瘦素对蛋鸡能量代谢及OB-R基因表达的影响[J].江苏农业科学,2015,43(08):198.
 Zhang Nannan,et al.Effects of exogenous leptin on energy metabolism and OB-R gene expression of laying hen[J].Jiangsu Agricultural Sciences,2015,43(22):198.
[4]王倩倩,陈大伟.镉暴露对蛋鸡卵巢的毒性损伤及酵母硒的保护效应[J].江苏农业科学,2016,44(10):278.
 Wang Qianqian,et al.Toxicity of cadmium on ovary in laying hens and protective effect of yeast selenium[J].Jiangsu Agricultural Sciences,2016,44(22):278.
[5]胡浩,伏其其.中国蛋鸡养殖成本效率影响因素探究——来自农户的补充证据[J].江苏农业科学,2017,45(09):308.
 Hu Hao,et al.Study on factors affecting cost efficiency of laying hens in China-Supplement evidences from farmers[J].Jiangsu Agricultural Sciences,2017,45(22):308.
[6]张保平,李娜,高惠林,等.抗豪猪大肠杆菌卵黄抗体的制备[J].江苏农业科学,2017,45(10):133.
 Zhang Baoping,et al.Preparation of egg yolk antibody against Escherichia coli from porcupines[J].Jiangsu Agricultural Sciences,2017,45(22):133.
[7]安婷婷,张菁菁,杨建生,等.饲粮中添加维生素C对高温条件下蛋鸡产蛋性能、蛋品质及血液生化指标的影响[J].江苏农业科学,2017,45(11):117.
 An Tingting,et al.Effects of vitamin C supplementation on laying performance, egg quality and blood biochemical indices of layers under high temperature conditions[J].Jiangsu Agricultural Sciences,2017,45(22):117.
[8]刘明生,蒋春茂,甘辉群,等.黄芪多糖和微生态制剂对蛋鸡生产性能和免疫机能的影响[J].江苏农业科学,2018,46(14):154.
 Liu Mingsheng,et al.Effects of astragalus polysaccharides and probiotics on production performance and immune function of hens[J].Jiangsu Agricultural Sciences,2018,46(22):154.
[9]何青芬,苏越,王坤,等.不同复合色素对蛋鸡生产性能及蛋品质的影响[J].江苏农业科学,2019,47(09):207.
 He Qingfen,et al.Effects of different compound pigments on performance and egg quality of laying hens[J].Jiangsu Agricultural Sciences,2019,47(22):207.
[10]陈大伟,刘茵茵,王倩倩,等.硒镉同时暴露对鸡蛋和蛋鸡组织中硒镉含量的影响[J].江苏农业科学,2019,47(20):203.
 Chen Dawei,et al.Effects of simultaneous exposure to selenium and cadmium on selenium and cadmium in eggs and laying hens[J].Jiangsu Agricultural Sciences,2019,47(22):203.

备注/Memo

备注/Memo:
收稿日期:2021-11-15
基金项目:江苏省种业振业揭榜挂帅项目(编号:JBGS[2021]104);江苏省农业重大新品种创制(编号:PZCZ201729);现代农业产业技术体系建设专项(编号:CARS-40-K01)。
作者简介:李永峰(1989—),男,河南新乡人,硕士,助理研究员,主要从事家禽遗传育种与繁殖研究。E-mail:liyf0120@163.com。
通信作者:曲亮,博士,副研究员,主要从事家禽遗传育种与繁殖研究。E-mail:676542516@qq.com。
更新日期/Last Update: 2022-11-20