|本期目录/Table of Contents|

[1]许珊华,章嘉淇,卢婷,等.基于微卫星标记的不同种质资源罗氏沼虾遗传多样性研究[J].江苏农业科学,2021,49(6):45-51.
 Xu Shanhua,et al.Study on genetic diversity of different germplasm resources of Macrobrachium rosenbergii based on microsatellite markers[J].Jiangsu Agricultural Sciences,2021,49(6):45-51.
点击复制

基于微卫星标记的不同种质资源罗氏沼虾遗传多样性研究(PDF)
分享到:

《江苏农业科学》[ISSN:1002-1302/CN:32-1214/S]

卷:
第49卷
期数:
2021年第6期
页码:
45-51
栏目:
生物技术
出版日期:
2021-03-20

文章信息/Info

Title:
Study on genetic diversity of different germplasm resources of Macrobrachium rosenbergii based on microsatellite markers
作者:
许珊华1章嘉淇1卢婷1符圆1唐潇1唐琼英2夏正龙3蔡缪荧3高权新2李景芬2杨国梁23
1.湖州师范学院求真学院,浙江湖州 313000; 2.湖州师范学院/浙江省水生生物资源养护与开发技术研究重点实验室/中国水产科学研究院水生动物繁育与营养重点实验室,浙江湖州 313000; 3.江苏数丰水产种业有限公司,江苏高邮 225654
Author(s):
Xu Shanhuaet al
关键词:
罗氏沼虾微卫星标记遗传多样性遗传结构种质资源
Keywords:
-
分类号:
S917.4
DOI:
-
文献标志码:
A
摘要:
为探究江浙地区不同罗氏沼虾(Macrobrachium rosenbergii)群体的遗传多样性和遗传结构,利用16个微卫星标记对潮丰(CF)、蓝天(LT)、源泉A(YQA)、源泉B(YQB)、嘉丰(JF)、南太湖(NTH)等6个江浙地区养殖群体和1个泰国正大(ZD)引进群体进行遗传变异分析。结果显示,16个微卫星位点均为高度多态位点;7个群体均为较高的遗传多样性,期望杂合度(He)和多态信息含量(PIC)均大于0.7,遗传多样性大小排序为ZD>YQA>YQB>JF>LT>NTH>CF;遗传分化指数(Fst)分析结果显示,泰国正大与江浙地区各群体间存在中等程度的遗传分化,Fst介于 0.101 45~0123 48之间;江浙地区群体除NTH与CF群体间为中等程度遗传分化(Fst=0.050 98)外,其余群体间的遗传分化程度较低,Fst介于0.015 71~0.040 99之间。AMOVA分析结果显示,遗传变异主要发生在个体内和群体内个体间,群体间遗传变异仅占2.10%。依据Nei’s遗传距离构建的非加权组平均法(UPGMA)系统进化树显示,泰国正大群体独占一支,江浙地区6个群体聚为另一支。Structure分析结果显示,所有样本被划分为2个理论群,江浙地区6个群体为一个集群,泰国正大群体为一个集群。该研究不但揭示了江浙地区罗氏沼虾养殖群体的遗传多样性现状,而且也为罗氏沼虾种质资源的保护、利用以及优良品种的选育提供了参考信息。
Abstract:
-

参考文献/References:

[1]New M B,Singholka S. Freshwater prawn farming. A manual for the culture of Macrobrachium rosenbergii[M]. FAO Fisheries Technical Paper,1982,225:116.
[2]谢忠明,李增崇,赵明森. 淡水经济虾类养殖技术[M]. 北京:中国农业出版社,2002.
[3]孙丽慧,潘茜,陈雪峰,等. 罗氏沼虾高效饲料转化家系与原种后代肌肉营养成分的比较[J]. 饲料工业,2019,40(4):40-45.
[4]FAO. The state of world fisheries and aquaculture 2018:meeting the sustainable development goals[R]. Rome:FAO,2018:23.
[5]Yang G L,Frinsko M,Chen X F,et al. Current status of the giant freshwater prawn (Macrobrachium rosenbergii) industry in China,with special reference to live transportation[J]. Aquaculture Research,2012,43(7):1049-1055.
[6]农业农村部渔业渔政管理局,全国水产技术推广总站,中国水产学会.中国渔业统计年鉴[M]. 北京:中国农业出版社,2019:1-152.
[7]唐琼英,夏正龙,蔡缪荧,等. 罗氏沼虾养殖群体表型性状间的相关性及类群差异分析[J]. 中国水产科学,2019,26(6):1075-1085.
[8]吕敏,黄光华,李旻,等. 异型雄性罗氏沼虾遗传多样性的微卫星分析[J]. 水产科学,2019,38(3):355-360.
[9]韩耀全. 罗氏沼虾迅速衰落的主要原因[C]//广西水产研究所论文集,2006:196-198.
[10]肖楚康,方刘,阮国良,等. 罗氏沼虾淡化养殖的现状与展望[J]. 江苏农业科学,2019,47(8):29-33.
[11]Miao W M,Ge X P. Freshwater prawn culture in China:an overview[J]. Aquaculture Asia,2002,7(1):9-12.
[12]Vandewoestijne S,Schtickzelle N,Baguette M. Positive correlation between genetic diversity and fitness in a large,well-connected metapopulation[J]. BMC Biology,2008,6:46.
[13]Liu F,Qu Y K,Geng C,et al. Analysis of the population structure and genetic diversity of the red swamp crayfish (Procambarus clarkia) in China using SSR markers[J]. Electronic Journal of Biotechnology,2020,47:59-71.
[14]杨子拓,刘丽. 微卫星分子标记技术在水产养殖行业的应用[J]. 广东农业科学,2014,41(18):114-116,126.
[15]陈万光,贾晓慧. 微卫星标记在水产动物遗传研究方面的应用[J]. 安徽农业科学,2009,37(12):5659-5660.
[16]Chareontawee K,Poompuang S,Na-Nakorn U,et al. Genetic diversity of hatchery stocks of giant freshwater prawn (Macrobrachium rosenbergii) in Thailand[J]. Aquaculture,2007,271(1/2/3/4):121-129.
[17]Schneider K J,Tidwell J H,Gomelsky B,et al. Genetic diversity of cultured and wild populations of the giant freshwater prawn Macrobrachium rosenbergii(de Man,1879)based on microsatellite analysis[J]. Aquaculture Research,2012,44(9):1-13.
[18]Khan S R,Akter H,Sultana N,et al. Genetic diversity in three river populations of the giant freshwater prawn (Macrobrachium rosenbergii) in Bangladesh assessed by microsatellite DNA markers[J]. International Journal of Agriculture&Biology,2014,16(1):195-200.
[19]Nguyen Thanh H,Liu Q G,Zhao L J,et al. Genetic diversity of the cultured giant freshwater prawn (Macrobrachium rosenbergii) in China based on microsatellite markers[J]. Biochemical Systematics and Ecology,2015,59:144-154.
[20]孙成飞,叶星,董浚键,等. 罗氏沼虾6个养殖群体遗传多样性的微卫星分析[J]. 南方水产科学,2015,11(2):20-26.
[21]陈佳毅. 罗氏沼虾亲虾群体遗传结构分析及育苗参数比较[D]. 扬州:扬州大学,2016:12-13.
[22]钟丹丹,林勇,宾石玉,等. 两个罗氏沼虾种群的遗传多样性研究[J]. 广东农业科学,2015,42(24):140-145.
[23]Yeh F C,Yang R C,Boyle T J,et al. PopGene32,microsoft windows-based freeware for population genetic analysis.Version 1.32[Z]. 2000.
[24]Kalinowski S T,Taper M L,Marshall T C. Revising how the computer program CERVUS accommodates genotyping error increases success in paternity assignment[J]. Molecular Ecology,2007,16(5):1099-1106.
[25]Tamura K,Dudley J,Nei M,et al. MEGA4:molecular evolutionary genetics analysis (MEGA) software version 4.0[J]. Molecular Biology and Evolution,2007,24(8):1596-1599.
[26]Excoffier L,Lischer H E. Arlequin suite ver 3.5:a new series of programs to perform population genetics analyses under Linux and Windows[J]. Molecular Ecology Resources,2010,10(3):564-567.
[27]Pritchard J K,Stephens M,Donnelly P. Inference of population structure using multilocus genotype data[J]. Genetics,2000,155(2):945-959.
[28]Botstein D,White R L,Skolnick M,et al. Construction of a genetic linkage map in man using restriction fragment length polymorphisms[J]. American Journal of Human Genetics,1980,32(3):314-331.
[29]Wright S. The interpretation of population structure by F-statistics with special regard to systems of mating[J]. Evolution,1965,19(3):395-420.
[30]朱其建,戴习林,邹卫丽,等. 罗氏沼虾抗病选育群体的抗病性能及其遗传多样性分析[J]. 水产学报,2013,37(10):1468-1478.
[31]蒋飞,戴习林,朱其建,等. 罗氏沼虾5个专门化品系选择系生长比较及其遗传结构分析[J]. 上海海洋大学学报,2014,23(3):329-337.
[32]Kallinowski S T. HP-RARE 1.0:a computer program for performing rarefaction on measures of allelic richness[J]. Molecular Ecology Notes,2005,5(1):187-189.
[33]张智,俞丹,刘飞,等. 西昌华吸鳅的微卫星引物筛选及赤水河四个地理种群的 遗传多样性分析[J]. 水生生物学报,2019,43(6):1224-1230.
[34]Husband B C,Barrett S H. Estimates of gene flow in Eichhornia paniculate(Pontederiaceae):effects of range substructure[J]. Heredity,1995,75(6):549-560.
[35]曲若竹,侯林,吕红丽,等. 群体遗传结构中的基因流[J]. 遗传,2004,26(3):377-382.
[36]Wright S. Evolution in mendelian populations[J]. Bulletin of Mathematical Biology,1990,52 (1/2):241-295.
[37]Evanno G,Regnaut S,Goudet J. Detecting the number of clusters of individuals using the software STRUCTURE:a simulation study[J]. Molecular Ecology,2005,14(8):2611-2620.

相似文献/References:

[1]李晓锋,马月辉,索效军,等.波尔山羊10个微卫星标记多态性分析[J].江苏农业科学,2013,41(07):23.
 Li Xiaofeng,et al.Genetic polymorphism of 10 microsatellite markers in Boer goat[J].Jiangsu Agricultural Sciences,2013,41(6):23.
[2]姚韩韩,林志华,周小龙,等.泥蚶奉化种群与韩国种群形态特征和遗传结构的差异分析[J].江苏农业科学,2014,42(03):183.
 Yao Hanhan,et al.Differences analysis of morphological characteristics and genetic structure between Fenghua population and Korean population of Tegillarca granosa[J].Jiangsu Agricultural Sciences,2014,42(6):183.
[3]戈阳,盛淑妮,高婷,等.虾-草-鹅生态农业模式发展现状及展望[J].江苏农业科学,2014,42(03):399.
 Ge Yang,et al.Development status and prospects of “shrimp-grass-goose” ecological agriculture mode[J].Jiangsu Agricultural Sciences,2014,42(6):399.
[4]徐海风,杨加银,程保山.26份菜用大豆品种(系)指纹图谱的构建及其遗传多样性分析[J].江苏农业科学,2014,42(05):145.
 Xu Haifeng,et al.Establishment of SSR fingerprint map and analysis of genetic diversity among 26 vegetable soybean varieties[J].Jiangsu Agricultural Sciences,2014,42(6):145.
[5]崔光艳,姜增华,王假真,等.2种养殖模式下罗氏沼虾肌肉营养成分的比较[J].江苏农业科学,2018,46(09):212.
 Cui Guangyan,et al.Comparison of muscle nutrient components of Macrobrachium rosenbergii under two cultured modes[J].Jiangsu Agricultural Sciences,2018,46(6):212.
[6]黄振远,陈雪峰,李喜莲,等.罗氏沼虾“南太湖2号” 种虾与2个引进群体形态特征的比较[J].江苏农业科学,2018,46(13):159.
 Huang Zhenyuan,et al.Study on morphological differences among Macrobrachium rosenbergii “South Taihu Ⅱ” seeding and two introduced populations[J].Jiangsu Agricultural Sciences,2018,46(6):159.
[7]杨彦豪,黄光华,冯鹏霏,等.生物絮团技术在罗氏沼虾养殖中的应用前景[J].江苏农业科学,2018,46(15):10.
 Yang Yanhao,et al.Application prospect of bio-flocs technology in Macrobrachium rosenbergii culture[J].Jiangsu Agricultural Sciences,2018,46(6):10.
[8]熊良伟,王帅兵,封琦,等.基于高通量测序的中华鳑鲏基因组微卫星特征分析及标记开发[J].江苏农业科学,2018,46(18):164.
 Xiong Liangwei,et al.Characteristic analysis of genomic microsatellites and development of SSR markers of Chinese bitterling (Rhodeus sinensis) using high-throughput sequencing[J].Jiangsu Agricultural Sciences,2018,46(6):164.
[9]王传聪,唐修阳,项杰,等.罗氏沼虾转录组SSR标记信息分析[J].江苏农业科学,2018,46(22):56.
 Wang Chuancong,et al.Analysis of SSR markers in transcriptome of Macrobrachium rosenbergii[J].Jiangsu Agricultural Sciences,2018,46(6):56.
[10]唐修阳,王传聪,项杰,等.罗氏沼虾转录组免疫相关SNP的挖掘与分析[J].江苏农业科学,2019,47(04):145.
 Tang Xiuyang,et al.Mining and analysis of immune-related SNPs in transcriptome of Macrobrachium rosenbergii[J].Jiangsu Agricultural Sciences,2019,47(6):145.

备注/Memo

备注/Memo:
收稿日期:2020-08-01
基金项目:现代农业产业技术体系建设专项(编号:CARS-48);浙江省农业(水产)新品种选育重大科技专项(编号:2016C02055-2-1);湖州师范学院求真学院大学生创新创业训练科研项目(编号:201902050)。
作者简介:许珊华(1999—),女,浙江金华人,主要从事水产动物遗传育种研究。E-mail:1904810322@qq.com。
通信作者:李景芬,博士,副教授,从事水产动物遗传育种研究,E-mail:lijingfen@zjhu.edu.cn;杨国梁,研究员,从事水产动物遗传育种研究,E-mail:ygl0572@163.com。
更新日期/Last Update: 2021-03-20