关联分析及其在不同分子标记中的应用综述-《江苏农业科学》

参考文献/References:

［1］Flint-Garcia S A，Thornberry J M. Structure of linkage disequilibrium in plants［J］. Annual Review of Plant Biology，2003，54(1)：357-374.
［2］Gibbs R A，Belmont J W，Hardenbol P，et al. The international HapMap project［J］. Nature，2003，426(6968)：789-796.
［3］Flint-Garcia S A，Anne-Céline T，Yu J，et al. Maize association population：a high-resolution platform for quantitative trait locus dissection［J］. The Plant Journal：for Cell and Molecular Biology，2005，44(6)：1054-1064.
［4］Flint-Garcia S A，Thornberry J M. Structure of linkage disequilibrium in plants［J］. Annual Review of Plant Biology，2003，54(4)：357-374.
［5］Yu J，Buckler E S. Genetic association mapping and genome organization of maize［J］. Current Opinion in Biotechnology，2006，17(2)：155-160.
［6］Gebhardt C，Ballvora A，Walkemeier B，et al. Assessing genetic potential in germplasm collections of crop plants by marker-trait association：a case study for potatoes with quantitative variation of resistance to late blight and maturity type［J］. Molecular Breeding，2004，13(1)：93-102.
［7］Breseghello F，Sorrells M E. Association analysis as a strategy for improvement of quantitative traits in plants［J］. Crop Science，2006，46(3)：1323-1330.
［8］Gupta P K，Rustgi S，Kulwal P L. Linkage disequilibrium and association studies in higher plants: Present status and future prospects［J］. Plant Molecular Biology，2005，57(4): 461-485.
［9］Jennings H S. The numerical results of diverse systems of breeding，with respect to two pairs of characters，linked or independent，with special relation to the effects of linkage［J］. Genetics，1917，2(2)：97.
［10］Remington D L，Thornsberry J M，Matsuoka Y，et al. Structure of linkage disequilibrium and phenotypic associations in the maize genome［J］. Proceedings of the National Academy of Sciences of the United States of America，2001，98(20)：11479-11484.
［11］Devlin B，Risch N. A comparison of linkage disequilibrium measures for fine-scale mapping［J］. Genomics，1995，29(2)：311-322.
［12］Balding D J. A tutorial on statistical methods for population association studies［J］. Nature Reviews Genetics，2006，7(10)：781-791.
［13］Hansen M，Kraft T，Ganestam S，et al. Linkage disequilibrium mapping of the bolting gene in sea beet using AFLP markers［J］. Genetical Research，2001，77(1)：61-66.
［14］Huang X，Zhao Y，Wei X，et al. Genome-wide association study of flowering time and grain yield traits in a worldwide collection of rice germplasm［J］. Nature Genetics，2012，44(1)：32-39.
［15］Weng J F，Xie C X，Hao Z F，et al. Genome-wide association study identifies candidate genes that affect plant height in Chinese elite maize (Zea mays L.) inbred lines［J］. PLoS One，2011，6(12)：e29229.
［16］张焕欣，翁建峰，张晓聪，等. 玉米穗行数全基因组关联分析［J］. 作物学报，2014，40(1)：1-6.
［17］Thornsberry J M，Goodman M M，Doebley J，et al. Dwarf8 polymorphisms associate with variation in flowering time［J］. Nature Genetics，2001，28(3)：286-289.
［18］Tian F，Badbury P J，Brown P J，et al. Genome-wide association study of leaf architecture in the maize nested association mapping population［J］. Nature Genetics，2011，43(2)：159-162.
［19］Salvi S，Sponza G，Morgante M，et al. Conserved noncoding genomic sequences associated with a flowering-time quantitative trait locus in maize［J］. Proceedings of the National Academy of Sciences of the United States of America，2007，104(27)：11376-11381.
［20］Ducrocq S，DVeyrieras J B M. Key impact of Vgt1 on flowering time adaptation in maize：evidence from association mapping and ecogeographical information［J］. Genetics，2008，178(4)：2433-2437.
［21］Wilson L M，Whitt S R，Ibán~ez A M，et al. Dissection of maize kernel composition and starch production by candidate association［J］. The Plant Cell，2004，16(10)：2719-2733.
［22］于永涛.玉米核心自交系群体结构及耐旱相关候选基因rab17的等位基因多样性分析［D］. 北京：中国农业科学院，2006.
［23］Ravel C，Praud S，Murigneux A，et al. Identification of Glu-B1-1 as a candidate gene for the quantity of high-molecular-weight glutenin in bread wheat (Triticum aestivum L.) by means of an association study［J］. Theoretical & Applied Genetics，2006，112(4)：738-743.
［24］Zheng S S，Byrne P F，Bai G H，et al. Association analysis reveals effects of wheat glutenin alleles and rye translocations on dough-mixing properties［J］. Journal of Cereal Science，2009，50(2)：283-290.
［25］Kraakman A T W，Niks R E，van den Berg P M M M，et al. Linkage disequilibrium mapping of yield and yield stability in modern spring barley cultivars［J］. Genetics，2004，168(1)：435-446.
［26］Kraakman A T W，Martinez F，Mussiraliev B，et al. Linkage disequilibrium mapping of morphological，resistance，and other agronomicallly relevant traits in modern spring barley cultivars［J］. Molecular Breeding，2006，17(1)：41-58.
［27］王蕾，黎冬华，齐小琼，等. 芝麻核心种质芝麻素和芝麻酚林的关联分析［J］. 中国油料作物学报，2014，36(1)：32-37.
［28］杨鑫雷，周晓栋，刘恒蔚，等. AFLP标记与棉花重要农艺性状的关联研究［J］. 棉花学报，2013，25(3)：211-216.
［29］Beer S C，Siripoonwiwat W，O’Donoughue L S，et al. Associations between molecular markers and quantitative traits in an oat germplasm pool：can we infer linkages？［J］. Journal of Agricultural Genomics，1997，3：1-16.
［30］Flavio B，Sorrells M E. Association mapping of kernel size and milling quality in wheat(Triticum aestivum L.) cultivars［J］. Genetics，2006，172(2)：1165-1177.
［31］Parisseaux B，Bernardo R. In silico mapping of quantitative trait loci in maize［J］. Theoretical and Applied Genetics，2004，109(3)：508-514.
［32］Malysheva-Otto L V，Ganal M W，Rder M S. Analysis of molecular diversity，population structure and linkage disequilibrium in a worldwide survey of cultivated barley germplasm (Hordeum vulgare L.)［J］. BMC Genetics，2006，7(2)：1-14.
［33］刘新伦，李志超，王亚娟，等. 抗麦长管蚜小麦的遗传多样性及SSR标记与麦长管蚜抗性的关联分析［J］. 农业生物技术学报，2015(3)：291-301.
［34］孙晓棠，卢冬冬，欧阳林娟，等. 水稻纹枯病抗性关联分析及抗性等位变异发掘［J］. 作物学报，2014，40(5)：779-787.
［35］范虎，文自翔，王春娥，等. 中国野生大豆群体农艺加工性状与SSR关联分析和特异材料的遗传构成［J］. 作物学报，2013，39(5)：775-788.
［36］左巧美.大豆生育期的遗传变异、QTL定位和关联分析［D］. 南京：南京农业大学，2011.
［37］王欢，孙霞，岳岩磊，等. 东北春大豆花荚脱落性状与SSR标记的关联分析［J］. 土壤与作物，2014，3(1)：32-40.
［38］陈氏秋江，党小景，刘强明，等. 水稻籽粒性状的SSR关联分析［J］. 中国水稻科学，2014，28(3)：243-257.
［39］贺道华，邢宏宜，赵俊兴，等. 棉花资源群体结构的推测与纤维品质的关联分析［J］. 西北农林科技大学学报：自然科学版，2011，39(1)：103-112.
［40］邵冰欣，王红梅，赵云雷，等. 陆地棉耐盐性状与SSR分子标记的关联分析［C］.呼和浩特：中国棉花学会2014年年会，2014.
［41］Brookes A J. The essence of SNPs［J］. Gene，1999，234(2)：177-186.
［42］Christian R，Jan L，Angelika C E，et al. Genome-wide association mapping of leaf metabolic profiles for dissecting complex traits in maize［J］. Proceedings of the National Academy of Sciences of the United States of America，2012，109(23)：8872-8877.
［43］Aranzana M J，Kim S，Zhao K Y，et al. Genome-wide association mapping in Arabidopsis identifies previously known flowering time and pathogen resistance genes［J］. PLoS Genetics，2005，1(5)：e60.
［44］姚玉莹.水稻核心种质抗倒特性及其主要农艺性状的全基因组关联分析［D］. 武汉：华中农业大学，2014.
［45］Beló A，Zheng P Z，Luck S，et al. Whole genome scan detects an allelic variant of fad2 associated with increased oleic acid levels in maize［J］. Molecular Genetics & Genomics，2008，279：1-10.
［46］任凤阳.玉米自交系萌发特性的评价及SNP关联分析［D］. 泰安：山东农业大学，2014.
［47］Hao D，Cheng H，Yin Z T，et al. Identification of single nucleotide polymorphisms and haplotypes associated with yield and yield components in soybean(Glycine max) landraces across multiple environments［J］. Theoretical and Applied Genetics，2012，124(3)：447-458.
［48］姜晓东，郭刚刚，张京.Amy6-4基因遗传多样性及其与α-淀粉酶活性的关联分析［J］. 作物学报，2014，40(2)：205-213.
［49］Palaisa K A，Morgante M，Williams M，et al. Contrasting effects of selection on sequence diversity and linkage disequilibrium at two phytoene synthase loci［J］. Plant Cell，2003，15(8)：1795-1806.

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